
genewise output
Score 22.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0  159 RGGGYNPLSGEGGGACSWRPGRRGPSSGGXG                   
                     RGGG     GEGG    W+ G  GP  GG G                   
                     RGGG----QGEGG---EWKAGSGGPLQGGVG                   
gi|432090942|gb73079 cggg    cgggg   gtaggaggcccgggg                   
                     gggg    agagg   agacggggctaggtg                   
                     ggag    ggatg   aggcgtaggcgagcc                   


//
>gi|432090942|gb|KB112968.1|:subseq(986001,100230).pep
RGGGQGEGGEWKAGSGGPLQGGVG
//
>gi|432090942|gb|KB112968.1|:subseq(986001,100230).[73079:73150].sp
CGGGGGGGAGGGCAGGGGGAAGGTGGGGAATGGAAGGCCGGGAGTGGAGGGCCGCTCCAG
GGAGGGGTCGGC
//
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	match	73079	73150	27.36	+	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	73079	73150	0.00	+	0	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
//

genewise output
Score 199.01 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0   56 RALRQRQLDRAAAAV                          PDVVVKRQ 
                     +A RQR+ D AAAAV                          P+ VV+RQ 
                     xASRQRRPDPAAAAV          E:A[gct]        PEDVVRRQ 
gi|432090942|g-56221 NgtacaccgcgggggGGTTCGTA  Intron 1   CAGCTcggggacc 
                     gccgaggcaccccct <1-----[56175:53050]-1>  caattgga 
                     gccgggggcgggtta                          cgctgagg 


SPP00000100_2.0   80 EALAAARLKMQEELNAQVEKHKEKLKQ                       
                     EALAAARLKMQEELNAQVE+HKEKL+Q                       
                     EALAAARLKMQEELNAQVERHKEKLRQ                       
gi|432090942|g-53023 ggtgggccaacggcagcggacagacccGTAGGGC  Intron 2      
                     actcccgtataaatacatagaaaatga<0-----[52942:50264]   
                     gtggcgcgagggaaccaaagcggacgg                       


SPP00000100_2.0  107    LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ                 
                        LEEEKRR+KIEMWDS+QEGKSY+G+A+KPQ                 
                        LEEEKRRRKIEMWDSLQEGKSYRGHARKPQ                 
gi|432090942|g-50266 CAGcgggacaaaagatgaccggaatagcgaacc                 
                     -0>taaaagggatatgagtaagagaggacgaca                 
                        tgagagaggtaggccgaggaccattcggtg                 


SPP00000100_2.0  137                        EEDSPGPSTSSVL-KRKSDRKPLRGG 
                                            EED+P PSTSS L KR +DRKPLRGG 
                                            EEDNPSPSTSSSLPKRPADRKPLRGG 
gi|432090942|g-50173 GTGAGGC  Intron 3   CAGgggacactattaccaccggaacccgg 
                     <0-----[50173:50081]-0>aaaacgcccccgtcagccagactggg 
                                            aacccctttgccccggaacggcatgt 


SPP00000100_2.0  162                           YNPLSGEGGGACSWRPGRRGPSS 
                                               YNPLSGEGGGAC+WRPGRRGPS+ 
                               G:G[ggt]        YNPLSGEGGGACTWRPGRRGPSA 
gi|432090942|g-50002 GGTAAGGA  Intron 4   CAGGTtacttggggggtatccgccgctg 
                      <1-----[50001:49744]-1>  aactcgagggcgcggcggggccc 
                                               tctgtgaaaaccggatacacaat 


SPP00000100_2.0  186 GG                                                
                     GG                                                
                     GG                                                
gi|432090942|g-49672 gg                                                
                     gg                                                
                     ca                                                


//
Making a A in phase 1 intron
Making a G in phase 1 intron
>gi|432090942|gb|KB112968.1|:subseq(986001,100230).pep
xASRQRRPDPAAAAVAPEDVVRRQEALAAARLKMQEELNAQVERHKEKLRQLEEEKRRRK
IEMWDSLQEGKSYRGHARKPQEEDNPSPSTSSSLPKRPADRKPLRGGGYNPLSGEGGGAC
TWRPGRRGPSAGG
//
>gi|432090942|gb|KB112968.1|:subseq(986001,100230).[56221:49665].sp
NGGGCCTCCAGGCAGAGGCGGCCGGACCCGGCGGCGGCTGCTGTAGCTCCCGAGGACGTT
GTGAGACGGCAGGAGGCTTTGGCGGCCGCGCGCCTGAAAATGCAGGAGGAACTAAACGCC
CAAGTAGAAAGGCACAAGGAGAAACTCCGGCAGCTTGAGGAAGAGAAACGGAGAAGGAAG
ATTGAAATGTGGGACAGCCTGCAAGAGGGGAAAAGCTACAGAGGTCATGCCAGGAAGCCT
CAGGAAGAAGACAACCCCAGCCCTTCTACTTCGTCCAGCCTCCCCAAGCGGCCAGCAGAC
AGGAAGCCCCTACGTGGGGGTGGTTATAACCCTTTGTCTGGGGAAGGAGGAGGAGCCTGC
ACGTGGCGACCTGGACGCCGAGGCCCATCAGCTGGCGGA
//
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	match	56221	49667	199.01	-	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	56221	56176	0.00	-	0	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	intron	56175	53050	0.00	-	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	53049	52943	0.00	-	2	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	intron	52942	50264	0.00	-	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	50263	50174	0.00	-	0	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	intron	50173	50081	0.00	-	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	50080	50002	0.00	-	0	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	intron	50001	49744	0.00	-	.	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
gi|432090942|gb|KB112968.1|:subseq(986001,100230)	GeneWise	cds	49743	49667	0.00	-	2	gi|432090942|gb|KB112968.1|:subseq(986001,100230)-genewise-prediction-1
//
